CDS

Accession Number TCMCG066C32908
gbkey CDS
Protein Id XP_034574040.1
Location complement(join(2083735..2083782,2083892..2084011,2084105..2084191,2084278..2088188,2088305..2088703,2088824..2089923,2090069..2090127,2090667..2090793,2090870..2090993,2091080..2091243,2092650..2092801))
Gene LOC117838210
GeneID 117838210
Organism Setaria viridis

Protein

Length 2096aa
Molecule type protein
Topology linear
Data_file_division PLN
dblink BioProject:PRJNA633601
db_source XM_034718149.1
Definition SCAR-like protein 1 isoform X1 [Setaria viridis]

EGGNOG-MAPPER Annotation

COG_category S
Description regulation of actin nucleation
KEGG_TC -
KEGG_Module -
KEGG_Reaction -
KEGG_rclass -
BRITE -
KEGG_ko -
EC -
KEGG_Pathway -
GOs GO:0000902        [VIEW IN EMBL-EBI]
GO:0000904        [VIEW IN EMBL-EBI]
GO:0005575        [VIEW IN EMBL-EBI]
GO:0005622        [VIEW IN EMBL-EBI]
GO:0005623        [VIEW IN EMBL-EBI]
GO:0005737        [VIEW IN EMBL-EBI]
GO:0005856        [VIEW IN EMBL-EBI]
GO:0005886        [VIEW IN EMBL-EBI]
GO:0006996        [VIEW IN EMBL-EBI]
GO:0007010        [VIEW IN EMBL-EBI]
GO:0007015        [VIEW IN EMBL-EBI]
GO:0008064        [VIEW IN EMBL-EBI]
GO:0008150        [VIEW IN EMBL-EBI]
GO:0009653        [VIEW IN EMBL-EBI]
GO:0009888        [VIEW IN EMBL-EBI]
GO:0009987        [VIEW IN EMBL-EBI]
GO:0010026        [VIEW IN EMBL-EBI]
GO:0010090        [VIEW IN EMBL-EBI]
GO:0010091        [VIEW IN EMBL-EBI]
GO:0010638        [VIEW IN EMBL-EBI]
GO:0016020        [VIEW IN EMBL-EBI]
GO:0016043        [VIEW IN EMBL-EBI]
GO:0030029        [VIEW IN EMBL-EBI]
GO:0030036        [VIEW IN EMBL-EBI]
GO:0030154        [VIEW IN EMBL-EBI]
GO:0030832        [VIEW IN EMBL-EBI]
GO:0030833        [VIEW IN EMBL-EBI]
GO:0030838        [VIEW IN EMBL-EBI]
GO:0031209        [VIEW IN EMBL-EBI]
GO:0031334        [VIEW IN EMBL-EBI]
GO:0032271        [VIEW IN EMBL-EBI]
GO:0032273        [VIEW IN EMBL-EBI]
GO:0032502        [VIEW IN EMBL-EBI]
GO:0032535        [VIEW IN EMBL-EBI]
GO:0032956        [VIEW IN EMBL-EBI]
GO:0032970        [VIEW IN EMBL-EBI]
GO:0032989        [VIEW IN EMBL-EBI]
GO:0032991        [VIEW IN EMBL-EBI]
GO:0033043        [VIEW IN EMBL-EBI]
GO:0043226        [VIEW IN EMBL-EBI]
GO:0043228        [VIEW IN EMBL-EBI]
GO:0043229        [VIEW IN EMBL-EBI]
GO:0043232        [VIEW IN EMBL-EBI]
GO:0043254        [VIEW IN EMBL-EBI]
GO:0044087        [VIEW IN EMBL-EBI]
GO:0044089        [VIEW IN EMBL-EBI]
GO:0044424        [VIEW IN EMBL-EBI]
GO:0044444        [VIEW IN EMBL-EBI]
GO:0044464        [VIEW IN EMBL-EBI]
GO:0045010        [VIEW IN EMBL-EBI]
GO:0048468        [VIEW IN EMBL-EBI]
GO:0048518        [VIEW IN EMBL-EBI]
GO:0048522        [VIEW IN EMBL-EBI]
GO:0048856        [VIEW IN EMBL-EBI]
GO:0048869        [VIEW IN EMBL-EBI]
GO:0050789        [VIEW IN EMBL-EBI]
GO:0050794        [VIEW IN EMBL-EBI]
GO:0051125        [VIEW IN EMBL-EBI]
GO:0051127        [VIEW IN EMBL-EBI]
GO:0051128        [VIEW IN EMBL-EBI]
GO:0051130        [VIEW IN EMBL-EBI]
GO:0051493        [VIEW IN EMBL-EBI]
GO:0051495        [VIEW IN EMBL-EBI]
GO:0065007        [VIEW IN EMBL-EBI]
GO:0065008        [VIEW IN EMBL-EBI]
GO:0071840        [VIEW IN EMBL-EBI]
GO:0071944        [VIEW IN EMBL-EBI]
GO:0090066        [VIEW IN EMBL-EBI]
GO:0090558        [VIEW IN EMBL-EBI]
GO:0090626        [VIEW IN EMBL-EBI]
GO:0097435        [VIEW IN EMBL-EBI]
GO:0110053        [VIEW IN EMBL-EBI]
GO:1902903        [VIEW IN EMBL-EBI]
GO:1902905        [VIEW IN EMBL-EBI]

Sequence

CDS:  
ATGATTCGGTACCAGATACGGAACGAGTACGGGCTGTCGGATCCGGAGCTGTACGCGGCGCCGGGGGAGGAGGATGACCCGGAGGCGCTCCTCGAGGGCGTCGCCATGGCCGGCCTCGTCGGCGTGCTCCGGCAGTTGGGGGATCTCGCCGAGTTTGCAGCTGAAATTTTTCATGACCTTCACGAAGATGTGATGGCCACTGCTTCTAGAGGACATGGTTTAATGCTCCGGTTGCAGCAGCTAGAGGCAGAATTTCCAGCAGTTGAGAAGGCAATTATATCCCAGACTGACCACTCAAATTATCCACATGATGATGGTGTCGACTGGCATGCTAATCTTCAACTTAAACAGAATATGATCACACAAGGAGATATGCCTCGCTTCATTTTGGATTCATATGAAGAATGCCGTGGTCCACCACACTTGTTCACGCTGGATAAGTTTGATGTTGCTGGTGCTGGAGCCTCCTTAAAACGATATTCAGACCCCTCTTTCTTCAAGGCAGAACATACCTCCAACATGTTAGAAATTGATGTTTCAATTGAAAAGAAGCCCCGTCGACTTAAGAAGAAGGCTATACGTTGGAGGAAAGGGGCGACACTTGAATCATTACTTGCAAAGTCTGAATCTTTTACTACCCCCAAGGATCGAACTTCGAGGAAAGTTCCACCTAGGACAACAAAGTTGAAATCCAGGCATCCAAGGAGTCCTGACCATAAAACTATTAGCAGAATCTGCAGGGAGCATCTGCTAGAAGTAATTTCATCACAACAAAAAATTTTCTCCAGATATTCTGGAAGGCAATGTCATGTGAGATTTAGGTCAACTGACTCGAGTGAAACGGGAGAAATGGAGAATTTTGGTGCCATTGTTCAGTCTTCTGGTAAACTGGAACTTACTAAAATTGTTCCAATAAACGAATCCAATACCATGGAGATTATATCTGCACCCACTGATGGATCAGCTTACCTGGAGCTAGGTGATAAACAAATTTTGGGGAAACAACATGAACCTTTAGAAAAAAATGGCATGGTCTGTGACTTAGGAAAGCTGCAGGATTGTCCAAACTTCCAGGTTGGTGAAAGTAATCACAGCTCGCATTCAGGACATGAAGAGAAACACATTTTAGCTGGGGTTCCTGCTGATCAAGATGCTGATGGCTGCAGGCCTGATGACATTTGTAGTGATCAAGACAACTTCATCGACGCTCTTAACAACATGGGCCCAGAAGGTGAAGCAGATCCTGAAATAGAAACTGAATTTGATCCCAGTGCCAACGTGGAACAGATTGAATTGAACCGTGACAGCAAGGAAGGTGAAGATGCATTGTATGCGGAGTCCCCACAAGTAGGTCCTGCAATAGACTCGCCACCAGGGTTCAACAGTTCATGCAATGCTGAAGAAGCGACCTGTATGGACTTGCCAAGTGACTCTGCTAATCCTGCAGTGTCAGCCAGTAATGGTCCTAGCTCTGTTTCACAATCTGGAAGACAATTGAATGATGTTGATTGGATCAAAGATGAAGAACCTTTTGATGATGAGGATCTAATGGATGTGAGCTCATCATCTAGTGTAGCTTCTGTCAATGCTGACTTACAAACCGATGAAGATCTCTATGGTTGTCAACAACACCAAGAGAAAGCTTATCACTATCAAAGTAGTGATAATGCAGCTGTTATCCATAGTTCTGATAAACGTTCACCCAAGACATCTAGTGACTTGGATGGTACGGCTGTCGGCAACAACGATTACACTGACAAAGTATATTGTTCCATGGAGCAAGGCCAGGATGTTGTGCTAGATGATACTTCTATGGTATCGAGCAAACCTAACTACGTTCCAGAAGACGAAGACAAACTCAGTTTTAGGATTGCTGATGATTTGTTTCCCCACCCGACCATACCCAATCAAGAGGAAATACAGGAGATGGAGAAAGAATTGGAAGGTGGATCTCTAGATACAGACACTTCACCTGGCATACTTGCATCATGGCCAGATAAGAACCATGTTATGTGCATGAATGATGTAGAGATGGACAAGGACAATGTTATCGTTCCTGAAGAAATTGCTGCTGATATGGCCCCAACAGGTTTGGATCCTCATGACAACCATGATCATCAAGATGGAATTGCACCAGAACATTCAGGCATGCGTAATAATCTACCGTATGAATCATATGATGATGAGATTGCTGAAGATATGCACTCTTTACTAAATGATGGTCTATCAACTCCTTTTAATAAGGATGTTGCAGAGGATAATCAAATAGTTGTGCTTGAAGGAGGGGCCTGTCCAGCTAGCCTCAACTCACACAAAGAGGATTCTGAGCAAGCACCTGCCATGGCCAGGAACTTATCTGATGTCCAAGAGTTTCCAGTAGTAATTCAAGGTGTACCTTCTCAAGAGGAGACAGAAGCTCATGCAGTAGAGACCCTTGCACCTGTGTCTTGTGTGTTCGGTGCTGATACAGAACCAGTGGGGATTAGTGTGCTTCCAGCCCCTAATACTTCCTCTCTACCTGACAACAGTAGTTCATGTGTAGAACAACATGCATTGACTGAAATGGAAGACATTGTGGAGGGTGGCAAAGTTGTGGTTGCAGAAGAATCAACTACTAGCAGGTTTGCAGATGACGTGGTACCTCCTGAAGATTTTATTGATGATGCCATATATACTGAAAAAACACAGATTCTGGCTACAGATTCAACTGAAGAAGCCTCTAGGCATGATCTGCAACTACAGCATAATTCTCCTTTAAGGGAAGGGTTGGAACCAGTAGAAGCTACTGACAGAAATCTTGGGGAAGTAGATGCATCAAGAGAATATATATCTAAGGAAAGGATGTTGCAGACAGACAATATTCCTCCTCTCAATGAAATGGAGCCTACAGGTGAAAAATGTAGTGACAGGGATGAGGTTCTTTCCGCAGGACATTTTCCTGTAGAATCTGATTATCAAGAGGAATTACTAGAGTCCAGTCATAATGCTGGAGTTCACTCTCTGTGTGATTTGGATAAGGATTTTGCAGTAAGCCTGAAATGTAACACCATGGGGGAACAACCAGAGGATGTTGACGATCAAGATTTGGCTTGGGGGATGCCCGATCAAGATTTTACTAGTACAAACCCATTCATGGATCCTGCCTACATGCTGAGCCTAACTCAAAATTGTCCATCTCCCATTGTGAGTTGCCAACCATGTTTCCCTGAAGAACAGGATTTCCTTTCAGAACTTCTAGTGCAACATGACAATATGGGAGCAGCTGCTGATTCCCTTTGGGAGCCTGCAACTCCACCTGATGAAGCGCCATTGCCATCAGAAGTTATGACTGAAGAAGATTTCAGATCCTTCTGCCGTGAGTATCATGAGATAAATTTTTCAGCTGCCGCTGAAGGTTGTCACAGTGAACCGGCCTCAGACTCTAACAATATTTCAAATGCTTTTCTGGTCAGTGAATCAGATTTTCCAAGTTCTGTTTCTGCCTTGCCAGTGAAGTTAAACCAGGAAGCCTGTGTTCATTCTAAGTTTGGTTCTCAGTGTGCTGAGCCTTCATCTACCATGGATATACAAGGCGCTACATCAATGACCTTTTCTGGCAAAGAAGATCTCACGGATGAGACACCAGGAGTAGATTCTCATTTAAAATCTGATGCATCTTTCAGTGTTAACAGAAGTTCTGAACTAGATATGCTCTCTGTTCCAGTAGATTTACAGCAGGAACAGCTGTCTGGAATTGATTCTCATAGTAGTTCTCCTTTGTTGGATAAAGAGATGACCGGTGAAGGATGCTGCTCTCCTTCAAGTGACGTTGTTGAAGTGAAGCACGATCTAGAAATCCACGCCAATCTTGCTCCACATTCTTTTATTAATGAAACTGTAGACGAACTGGATGTTGCTGTACAAGTGGAACCAGAGGTAGGAGCTCATGCTGATGATAACCAAGATATTCCATGTTGTTCAACTAGCGAAAAGGATGATTCCCTTATGGGCAAATCTGTTCTAGTTCAGGAGTCAGAAGTTTTTGCCTTTGGTGAATTTGATTCTCCAATCGTTCCATCATCTTCAATTGATGACATTGAAGACAATCAAGACTCTGCTTCGAGGACTTATGTTCAAACAGAACAAGAGTCAGAATGCTGCACCTCAGGTGAACTTGATTCTCAAACCACTCCATCCCCTTTGCTTGATGAGAAGATTGACAAACTGGACGGCCCTCCTTTGAGCAATGCTGCCATGCTGGATCAGGAATCAGAAGTTTGTGTTCCAAGTGGGCTTGATTCTCGAATCGCTCTATGTTCTTCAACTGATGAGGATGTACATGAATTGGATCATCCTCCTTTGAGCAGTTCAGTTTTAATCAATCCTGAGTCAGAAGATCATGTGTTGGGTGACACTAGTTCCAAGGTTACTATGTGTTCTTTAGTTGAAGACAAGATTGATGAATCCAAAGATCCTCAACCAAACCATAATTTTCCTGAGGTACGGCAGGAAGCTCTTGCATCCCCTGAATTAGACTTTCAGGTTGCTCCATGTCCCTTGAATGATGATAAGGTTGGTGAAATAGAAGGGCCTCCATCGTGCAATGGCCGGGTGGAATCAGAAAAGGAATCTGATTGCTCAATTGAATCTGATTCCCAAAGTGCGCCATGTTCTTCAAATTCACCAGTACTAGCTGACACAAGAGTATTGACTTCTCCTGTCATGCCTAATAATGAGGAAATGAATCAGTTGTCTCCTGGTCCGCCACCCGCTGTACAATTTCAAAATGATTCCTACAAAGATCCTCAAGCTCAAGCACCACCCCCTCTCCCTCCCCTCCAGTGGAGGCTTGGTAGGCCTCGGCTAGGGCTTCTAAGTAGAAAAAGCTCTATGCCTGAGCCTGCAAGGAGCATAGATCCTGTTTTCCAGGCATCAAACCAAGACATGGATATCAGGCTAGGTTTGCTTGATCAACCAGATAGATCAATAGAACCAGTATCCTCTCAAGCGACCGAAGAAGATACGCATCAGAGTTCTTTGTTAGACGGTAATGATCAAAATGTAGAAGTTGGATTGTCGACCAGTGTCACAGTAACTGGTGTGGCAAGGACTGAACACTATTGGCCATTCTCAGAAGCTTCAGAGAACATTAAGGGACCGGAGCATATTTCTTCATCATTTAACGGAAATCTGGATGCTGGGGTCACATCAGCAACAGCAGACGAGGAACATCTGGATGATTCTGGGGTGACACATGGAGCAGTTTTATACTCATCAGACCCGCTGCTTCGATTACCTGCAGATGAACAGCAGGAACCTCAACTGTGCACCTTATCTTCAGATACTCGAGAAACTAGTGTGCATCCCAGCTGTATGCATCCAGGTGCATCTGAAAATGATAAGTCAACAGATGCTGCTGGTGGCATGGAAAGCACCTCAACAAAGGGACCTGATTATGAAAATAGTTTTTACCAGCAACCTCAGCATGTTGAATCGTTCTCAAAGACTTCAGATTATGGAGAGCATATTACAGATGCATCGGTGGAGGGTGTAAAACATCAGTCTGGTACAAGCGAGACACTTTCAGACACAGCAAAGCATTCTGCACCAGGCACATTGTTGAAAGATGGGAATAGCAAGGGGAGTCAAATTTTGCAGGAACAAAATGTGGGTAGTTCTCAGGACAATAAGTCAGGAGGCCCATTGCCCAGCTCGGAATCAATGGCATCTGAAGATTATCGACATGATGAATATAATTTGGAGAGAGAAAATAGACACCCGCCTAGCAACCCAGGCCCACTAGTGGCATGGCCTGGTGATAAAAATAACTTCTTCAGTGGCCTTGATGAAGCTAGCTTTGCACATGCTGAGCAACCACCTGTGATGGGATGGACTGTTGGGCCTCAGATGATTCATCCTAAGTATGGTATATCAGCAGAAGAGAGCCAATTTGAGCCAAATATCACCGACAATCATTTAATCAAGAAGCCTATTTCAATTAAAAACATCCCAAGGAATCCACTGGTCGATGCTGTTGCTGCTCATGATAGAAGCTCGATGCGAAAGATTTCAGAGCTTGCACCATCGGCTGACAAGCCGAAGCCCAGCGAGAGAAATCTGTTGCTAGAGCAGATAAGAAACAAGACCTTCAACCTGAAACCGGTGGCTCCTTCTCAGCCAACAGCCATGAGATCCCCTGCTAGAGCTAATACTAGAAACTTAAAGGTTGCTGCAATCATAGAAAAGGCAAATGCCATCCGACAGGCGGTGGGAAGTGACGACGAAGACGCAGATAGTTGGAGTGACGCCTAG
Protein:  
MIRYQIRNEYGLSDPELYAAPGEEDDPEALLEGVAMAGLVGVLRQLGDLAEFAAEIFHDLHEDVMATASRGHGLMLRLQQLEAEFPAVEKAIISQTDHSNYPHDDGVDWHANLQLKQNMITQGDMPRFILDSYEECRGPPHLFTLDKFDVAGAGASLKRYSDPSFFKAEHTSNMLEIDVSIEKKPRRLKKKAIRWRKGATLESLLAKSESFTTPKDRTSRKVPPRTTKLKSRHPRSPDHKTISRICREHLLEVISSQQKIFSRYSGRQCHVRFRSTDSSETGEMENFGAIVQSSGKLELTKIVPINESNTMEIISAPTDGSAYLELGDKQILGKQHEPLEKNGMVCDLGKLQDCPNFQVGESNHSSHSGHEEKHILAGVPADQDADGCRPDDICSDQDNFIDALNNMGPEGEADPEIETEFDPSANVEQIELNRDSKEGEDALYAESPQVGPAIDSPPGFNSSCNAEEATCMDLPSDSANPAVSASNGPSSVSQSGRQLNDVDWIKDEEPFDDEDLMDVSSSSSVASVNADLQTDEDLYGCQQHQEKAYHYQSSDNAAVIHSSDKRSPKTSSDLDGTAVGNNDYTDKVYCSMEQGQDVVLDDTSMVSSKPNYVPEDEDKLSFRIADDLFPHPTIPNQEEIQEMEKELEGGSLDTDTSPGILASWPDKNHVMCMNDVEMDKDNVIVPEEIAADMAPTGLDPHDNHDHQDGIAPEHSGMRNNLPYESYDDEIAEDMHSLLNDGLSTPFNKDVAEDNQIVVLEGGACPASLNSHKEDSEQAPAMARNLSDVQEFPVVIQGVPSQEETEAHAVETLAPVSCVFGADTEPVGISVLPAPNTSSLPDNSSSCVEQHALTEMEDIVEGGKVVVAEESTTSRFADDVVPPEDFIDDAIYTEKTQILATDSTEEASRHDLQLQHNSPLREGLEPVEATDRNLGEVDASREYISKERMLQTDNIPPLNEMEPTGEKCSDRDEVLSAGHFPVESDYQEELLESSHNAGVHSLCDLDKDFAVSLKCNTMGEQPEDVDDQDLAWGMPDQDFTSTNPFMDPAYMLSLTQNCPSPIVSCQPCFPEEQDFLSELLVQHDNMGAAADSLWEPATPPDEAPLPSEVMTEEDFRSFCREYHEINFSAAAEGCHSEPASDSNNISNAFLVSESDFPSSVSALPVKLNQEACVHSKFGSQCAEPSSTMDIQGATSMTFSGKEDLTDETPGVDSHLKSDASFSVNRSSELDMLSVPVDLQQEQLSGIDSHSSSPLLDKEMTGEGCCSPSSDVVEVKHDLEIHANLAPHSFINETVDELDVAVQVEPEVGAHADDNQDIPCCSTSEKDDSLMGKSVLVQESEVFAFGEFDSPIVPSSSIDDIEDNQDSASRTYVQTEQESECCTSGELDSQTTPSPLLDEKIDKLDGPPLSNAAMLDQESEVCVPSGLDSRIALCSSTDEDVHELDHPPLSSSVLINPESEDHVLGDTSSKVTMCSLVEDKIDESKDPQPNHNFPEVRQEALASPELDFQVAPCPLNDDKVGEIEGPPSCNGRVESEKESDCSIESDSQSAPCSSNSPVLADTRVLTSPVMPNNEEMNQLSPGPPPAVQFQNDSYKDPQAQAPPPLPPLQWRLGRPRLGLLSRKSSMPEPARSIDPVFQASNQDMDIRLGLLDQPDRSIEPVSSQATEEDTHQSSLLDGNDQNVEVGLSTSVTVTGVARTEHYWPFSEASENIKGPEHISSSFNGNLDAGVTSATADEEHLDDSGVTHGAVLYSSDPLLRLPADEQQEPQLCTLSSDTRETSVHPSCMHPGASENDKSTDAAGGMESTSTKGPDYENSFYQQPQHVESFSKTSDYGEHITDASVEGVKHQSGTSETLSDTAKHSAPGTLLKDGNSKGSQILQEQNVGSSQDNKSGGPLPSSESMASEDYRHDEYNLERENRHPPSNPGPLVAWPGDKNNFFSGLDEASFAHAEQPPVMGWTVGPQMIHPKYGISAEESQFEPNITDNHLIKKPISIKNIPRNPLVDAVAAHDRSSMRKISELAPSADKPKPSERNLLLEQIRNKTFNLKPVAPSQPTAMRSPARANTRNLKVAAIIEKANAIRQAVGSDDEDADSWSDA